EMBOSS explorer


Generate a sparse protein signature from an alignment (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

inappropriate datatype dirlist

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inappropriate datatype directory

inappropriate datatype directory

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Substitution matrix to be used. Use one of the following two fields:

  1. To access a standard EMBOSS data file, enter the name here: (default is EBLOSUM62 for protein, EDNAFULL for nucleic)
  2. To upload a data file from your local computer, select it here:
Required section
The % sparsity of signature
Window size
Ignore alignment positions making less than a threshold number of contacts?
Threshold contact number
Ignore alignment positions with post_similar value of 0?
Output section
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.