EMBOSS explorer

siggen

Generate a sparse protein signature from an alignment (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

inappropriate datatype dirlist

Select number
Select number

inappropriate datatype directory

inappropriate datatype directory

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Substitution matrix to be used. Use one of the following two fields:

  1. To access a standard EMBOSS data file, enter the name here: (default is EBLOSUM62 for protein, EDNAFULL for nucleic)
  2. To upload a data file from your local computer, select it here:
Required section
The % sparsity of signature
Window size
Ignore alignment positions making less than a threshold number of contacts?
Threshold contact number
Ignore alignment positions with post_similar value of 0?
Output section
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.