EMBOSS explorer


Find RNA sequences with a given secondary structure (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section
Vienna RNA structures file:

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:
Vienna RNA parameters file (optional):
Advanced section
Allow GU pairs?
Allow GU pairs at end of helices?
Allow lonely pairs?
Convert T to U?
Non-standard bases
Stabilizing energies for tetra-loops?
Find sequences using only these bases
Stopping value
Number of times to search for the same structure
Continue until a match is found?
Show information for unsuccessful searches?
Output section
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.