EMBOSS explorer

ovrnafoldpf

Calculate min. energy RNA structure / pair probabilities (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:
Vienna RNA structure constraints file (optional):
Vienna RNA parameters file (optional):
Advanced section
Temperature
Allow circular RNA?
Allow GU pairs?
Allow GU pairs at end of helices?
Allow lonely pairs?
Convert T to U?
Non-standard bases
Stabilizing energies for tetra-loops?
Method
Estimate of ensemble free energy
Method
Output section
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.