EMBOSS explorer


Discrete character parsimony (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section
Select an input file::
Phylip tree file (optional):
Weights file:
Additional section
Choose the parsimony method to use
Number of trees to save
More thorough search?
Rearrange on just one best tree?
Number of times to randomise
Random number seed between 1 and 32767 (must be odd)
Species number to use as outgroup
Use threshold parsimony?
Threshold value
Output section
Write out trees to tree file?
Print data at start of run?
Print indications of progress of run?
Print out tree?
Print steps at each site?
Print states at all nodes of tree?
Use dot differencing to display results?
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.