EMBOSS explorer


Sequence with profile (ClustalO wrapper) (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:
Pre-aligned protein multiple sequence file:
Clustalo distance matrix file (optional):
Clustalo guide tree file (optional):
Required section
Advanced section
Dealign input sequences?
Number of (combined guide tree/HMM) iterations
Maximum guide tree iterations
Maximum number of HMM iterations
Maximum number of sequences
Maximum length of sequence
Set options automatically?
Output section
Output sequence format
Log progress to standard output if not used for output?
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.