EMBOSS explorer


Align sequences to an HMM profile (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section
HMMER hidden markov model file:

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:
HMMER alignment file (optional):
HMMER alignment file (optional):
Additional section
Advanced section
Output section
Output alignment format
Only show match state alignment symbols.?
Suppress all output except the alignment.?
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.