EMBOSS explorer

ehmmalign

Align sequences to an HMM profile (read the manual)

Unshaded fields are optional and can safely be ignored. (hide optional fields)

Input section
HMMER hidden markov model file:

Select an input sequence. Use one of the following three fields:

  1. To access a sequence from a database, enter the USA here:
  2. To upload a sequence from your local computer, select it here:
  3. To enter the sequence data manually, type here:
HMMER alignment file (optional):
HMMER alignment file (optional):
Additional section
Advanced section
Output section
Output alignment format
Only show match state alignment symbols.?
Suppress all output except the alignment.?
Run section
Email address: If you are submitting a long job and would like to be informed by email when it finishes, enter your email address here.